BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB015A12SP1|AL426781
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig419 694 0.0
3x_Contig848 641 0.0
>3x_Contig419
Length = 1943
Score = 694 bits (338), Expect = 0.0
Identities = 396/418 (94%), Gaps = 1/418 (0%)
Strand = Plus / Plus
Query: 501 accaccccaggkaaacaaagaggacaaaccagacaacgccaataaccagkcgaakacgtc 560
||||||||| | ||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 58 accaccccatgtaaacaaagaggacaaaccagacaacgccaataaccagtcgaatacttc 117
Query: 561 accttcctttggagaygcagcaatgaaggataacaaaccaaagacacaagt-gacaataa 619
||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||| | ||
Sbjct: 118 accttcctttggagatgcagcaatgaaggatagcaaaccaaagacgcaagtcgaccacaa 177
Query: 620 taccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaacctt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 taccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttggtaaagaacctt 237
Query: 680 ggttagccaatgcagccatggatcttgagcaagcaaaaacagcagagttaccaacagata 739
||||||||||||||||||| |||||||| ||| |||| ||||| | |||||||||||||
Sbjct: 238 ggttagccaatgcagccattgatcttgaacaaccaaagacagcgcaattaccaacagata 297
Query: 740 gaacagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcatttt 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaacagcaatcaagataacaacgttgatcacagaaggtaaacctttaataccggcatttt 357
Query: 800 gaatggaaataacgaatggggatgcagcagcatcgacagaactttgtccaatcaatcyat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 358 gaatggaaataacgaatggggatgcagcagcatcgacagaactttgtccaatcaatctat 417
Query: 860 cactggtgtatgggaccaatagaccgaccatcaacaaggsaaggatatagaaaagagt 917
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 418 cactggtgtatggaaccaataggccgaccatcaacaaggcaaggatatagaaaagagt 475
>3x_Contig848
Length = 3091
Score = 641 bits (312), Expect = 0.0
Identities = 346/360 (96%), Gaps = 3/360 (0%)
Strand = Plus / Minus
Query: 1 gatcaaaggtt-agaaaatcagttcagcgtaataattgataagggctcagcccttcccaa 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gatcaaaggttcagaaaatcagttcagcgtaataattgataagggctcagcccttcccaa 683
Query: 60 ttagcattcgttaatactggtattcaacaccagaacttgtacattctgtagtagaatggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttagcattcgttaatactggtattcaacaccagaacttgtacattctgtagtagaatggt 623
Query: 120 ttggaagcgataaaagccttttcttcggcaatttcttgtttcaaagcttcgatgtcagtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttggaagcgataaaagccttttcttcggcaatttcttgtttcaaagcttcgatgtcagtt 563
Query: 180 tctcttctaccagtatcgatatcaatatycgwggctctgataaacaacttccagtttttc 239
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 562 tctcttctaccagtatcgatatcaatattcttggctctgataaacaacttccagtttttc 503
Query: 240 ttccagatcttgtgaccgatgtagaaygcratsaagattgggaamgataggtaagcttcg 299
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 502 ttccagatcttgtgaccgatgtagaacgcaatcaagattgggaacgataggtaagcttcg 443
Query: 300 aagaakgcwgmtgcacttggtttacycaccaattggggaacaaagcgatccagaattggg 359
||||| || | ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 442 aagaaggcagatgcacttggttta-tcaccaatt-gggaacaaagcgatccagaattggg 385
Score = 485 bits (236), Expect = e-137
Identities = 252/260 (96%)
Strand = Plus / Minus
Query: 489 acaaagcargagaccaccccaggkaaacaaagaggacaaaccagacaacgccaataacca 548
|||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaaagcatgataccaccccatgtaaacaaagaggacaaaccagacaacgccaataacca 201
Query: 549 gkcgaakacgtcaccttcctttggagaygcagcaatgaaggataacaaaccaaagacaca 608
| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 gtcgaatacttcaccttcctttggagatgcagcaatgaaggataacaaaccaaagacaca 141
Query: 609 agtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttgg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agtgacaataataccgaccaatggtctaccggttctgtcaatgtaaccaaaaatctttgg 81
Query: 669 taaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacagcagagtt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 taaagaaccttggttagccaatgcagccatggatcttgagcaagcaaaaacagcagagtt 21
Query: 729 accaacagatagaacagcaa 748
||||||||||||||||||||
Sbjct: 20 accaacagatagaacagcaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.35
Gapped
Lambda K H
1.42 0.718 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6231
Number of Sequences: 1807
Number of extensions: 6231
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 49 (101.2 bits)